Starting a Business

How do I set up payroll for employees?

Minnesota Operational Guidance

Published May 7, 2026 State-specific operational guidance Update This Question
Operational Review Team

This operational guidance was reviewed by the 70 / 30 Business Operations Intelligence Team, specializing in business operations, payroll compliance, workforce automation, licensing, and multi-state operational requirements.

Setting Up Payroll for Employees in Minnesota

Establishing payroll for your Minnesota business involves several key operational steps to ensure compliance and smooth employee payments.

Register for Employer Identification Numbers

  • Federal EIN: Obtain an Employer Identification Number (EIN) from the IRS to report taxes and payroll withholding.
  • Minnesota Withholding Account: Register with the Minnesota Department of Revenue to withhold state income taxes from employee wages.
  • Unemployment Insurance Account: Set up an account with the Minnesota Unemployment Insurance Program to manage unemployment tax reporting and payments.

Classify Employees Correctly

Ensure proper classification of workers as employees or independent contractors. Employee classification impacts payroll tax withholding, benefits, and compliance with Minnesota labor laws.

Set Up Payroll Systems

  • Choose Payroll Software or Service: Use payroll software or a professional service that supports Minnesota tax calculations, reporting, and payment schedules.
  • Collect Employee Information: Gather Form W-4 for federal withholding and Minnesota Form W-4MN for state withholding.
  • Track Hours and Wages: Implement timekeeping and wage tracking systems to ensure accurate payroll processing.

Calculate and Withhold Taxes

Withhold federal income tax, Social Security, Medicare, and Minnesota state income tax from employee wages. Also, calculate employer contributions for Social Security, Medicare, and state unemployment insurance.

Payroll Reporting and Payments

  • File Payroll Tax Reports: Submit federal payroll tax returns (e.g., Form 941) and Minnesota state tax reports as required.
  • Deposit Payroll Taxes: Make timely deposits of withheld taxes and employer contributions to IRS and Minnesota Department of Revenue accounts.
  • Issue Paychecks and Statements: Provide employees with pay stubs detailing wages, taxes withheld, and deductions.

Maintain Payroll Records

Keep detailed payroll records for each employee, including hours worked, wages paid, tax withholdings, and tax filings. Minnesota requires retaining payroll records for at least three years.

Operational References

Operational guidance may vary by state, industry, licensing requirements, workforce regulations, and tax law updates. Businesses should verify compliance, payroll, licensing, and tax requirements directly with official agencies and qualified advisors.

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